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Table 2 Significant DMPs associated with late severe GI and GU adverse effects

From: Epigenome-wide analysis reveals potential biomarkers for radiation-induced toxicity risk in prostate cancer

Probe ID

Chr

Genomic position

logFC

t

p-value

Adjusted p-value

Overlapping genes

Gene regions

cg13574053

22

49,749,233

0.268

6.27

8.69E−09

0.0059

–

–

cg00162348

16

30,773,695

0.270

6.00

3.03E−08

0.0098

RNF40 and C16orf93

5’UTR; TSS200

cg08657377

7

139,875,178

− 0.464

− 5.89

4.90E−08

0.0098

JHDM1D

Body

cg01353941

3

191,781,655

− 1.015

− 5.82

6.61E−08

0.0098

–

–

cg18382341

1

230,778,080

0.317

5.81

7.16E−08

0.0098

COG2

TSS00

cg18009484

11

131,630,593

− 0.764

− 5.70

1.15E−07

0.0131

NTM

Body

cg25666010

1

1,726,516

− 0.276

− 5.58

1.92E−07

0.0168

GNB1

Body

cg09057763

16

73,205,994

− 0.248

− 5.58

1.97E−07

0.0168

–

–

cg27230044

7

94,285,993

0.177

5.49

2.94E−07

0.0212

PEG10

TSS1500

cg14825555

1

27,190,639

− 0.230

− 5.44

3.58E−07

0.0212

SFN

1stExon; 3’UTR

cg15490596

19

54,415,736

− 0.458

− 5.42

3.92E−07

0.0212

CACNG7

TSS1500

cg02534744

19

863,226

− 0.556

− 5.41

4.13E−07

0.0212

CFD

Body

cg17872757

11

128,564,180

− 0.350

− 5.40

4.23E−07

0.0212

FLI1

Body; 5’UTR

cg05779526

3

23,084,046

0.379

5.40

4.34E−07

0.0212

–

–

cg08417142

16

89,439,771

− 0.199

− 5.30

6.50E−07

0.0296

ANKRD11

5’UTR

cg07268021

13

30,054,459

− 0.303

− 5.28

7.13E−07

0.0304

MTUS2

Body

cg07345874

14

21,248,717

− 0.456

− 5.25

8.05E−07

0.0323

RNASE6

TSS1500

cg26359940

12

41,221,579

− 0.434

− 5.23

8.79E−07

0.0333

CNTN1

TSS200; 5’UTR

cg11679914

7

99,662,323

0.301

5.22

9.38E−07

0.0337

ZNF3 and ZSCAN21

3’UTR

cg13638229

10

131,697,080

− 0.714

− 5.21

9.90E−07

0.0337

EBF3

Body

cg15055494

17

17,140,558

0.251

5.19

1.05E−06

0.0342

FLCN

TSS200

cg10459387

3

180,319,718

− 0.603

− 5.18

1.11E−06

0.0344

TTC14

TSS200

cg16379698

4

187,457,682

− 0.631

− 5.15

1.27E−06

0.0369

MTNR1A

Body

cg03493516

16

29,742,019

− 0.250

− 5.14

1.30E−06

0.0369

–

–

cg12593138

12

53,439,997

− 0.656

− 5.13

1.39E−06

0.0378

TNS2 and LOC283335

TSS1500; Body

cg11701055

19

2,785,324

0.345

5.12

1.44E−06

0.0378

THOP1

TSS200

cg02918253

19

19,323,996

− 0.433

− 5.11

1.50E−06

0.0379

NCAN

5’UTR

cg16924102

4

20,044,588

0.656

5.08

1.65E−06

0.0389

–

–

cg16063716

14

105,045,992

0.245

5.08

1.70E−06

0.0389

C14orf180

TSS200

cg17089162

7

156,851,277

0.346

5.07

1.76E−06

0.0389

–

–

cg12469150

18

60,992,501

0.326

5.06

1.82E−06

0.0389

–

–

cg27446047

18

44,702,797

0.356

5.06

1.83E−06

0.0389

IER3IP1

TSS200

cg13332944

17

16,769,594

0.234

5.02

2.20E−06

0.0402

–

–

cg04927113

5

142,950,693

− 0.211

− 5.01

2.21E−06

0.0402

–

–

cg03323503

17

80,965,251

− 0.281

− 5.01

2.22E−06

0.0402

B3GNTL1

Body

cg13218425

10

4,868,364

− 0.570

− 5.00

2.30E−06

0.0402

AKR1E2

TSS200

cg26878190

5

1,794,420

0.365

5.00

2.35E−06

0.0402

–

–

cg22417797

12

101,801,627

0.265

5.00

2.37E−06

0.0402

ARL1

TSS200

cg15682476

6

88,537,469

0.374

4.99

2.43E−06

0.0402

LOC101928911

Body

cg03840924

17

47,645,509

0.327

4.99

2.43E−06

0.0402

–

–

cg02352281

3

46,139,305

0.321

4.99

2.45E−06

0.0402

–

–

cg22657044

20

48,551,982

− 0.499

− 4.98

2.55E−06

0.0402

RNF114

TSS1500

cg21827912

4

86,763,803

0.520

4.97

2.63E−06

0.0402

ARHGAP24

Body; 5’UTR

cg18377764

14

66,869,995

0.312

4.97

2.67E−06

0.0402

–

–

cg20354777

3

140,814,133

− 0.511

− 4.97

2.70E−06

0.0402

SPSB4

Body

cg09294095

11

131,630,464

− 0.368

− 4.96

2.81E−06

0.0402

NTM

Body

cg00152975

19

17,981,922

− 0.223

− 4.96

2.82E−06

0.0402

SLC5A5

TSS1500

cg09056281

1

84,164,484

− 0.243

− 4.95

2.83E−06

0.0402

LOC101927587

Body

cg04631318

1

48,231,352

0.263

4.95

2.89E−06

0.0402

TRABD2B

3’UTR

cg25094081

6

31,829,205

0.265

4.91

3.44E−06

0.0469

NEU1

Body

cg16113298

11

31,832,729

− 0.273

− 4.89

3.66E−06

0.0481

PAX6

5’UTR; 1stExon

cg14861221

3

57,743,016

0.256

4.89

3.74E−06

0.0481

SLMAP

TSS200

cg01236268

22

49,552,838

− 0.354

− 4.88

3.86E−06

0.0481

–

–

cg14185656

9

94,493,225

0.252

4.88

3.87E−06

0.0481

ROR2

Body

cg00276256

10

1,330,230

− 0.269

− 4.88

3.88E−06

0.0481

ADARB2

Body

cg07786675

1

27,189,985

− 0.271

− 4.87

3.95E−06

0.0481

SFN

1stExon

  1. Chr chromosome, logFC Fold change converted to a logarithmic scale, t t-statistic