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Table 3 Statistical details for DMRs between LGG and GBM

From: Data mining of bulk and single-cell RNA sequencing introduces OBI1-AS1 as an astrocyte marker with possible role in glioma recurrence and progression

Chromosome

Start

End

Width

Strand

no.CpGsa

min_smoothed_fdrb

Stoufferc

HMFDRd

Fishere

Maxdifff

Meandiffg

Overlapping.genes

chr13

78491982

78494462

2481

*

49

4.97E−154

2.40E−122

2.52E−10

3.81E−137

0.335893

0.086379

OBI1-AS1, EDNRB

chr13

79168044

79168573

530

*

6

3.38E−45

8.34E−37

1.81E−09

4.87E−35

0.343167

0.220062

OBI1-AS1

chr13

79181440

79184529

3090

*

14

1.88E−28

4.46E−21

4.91E−08

9.10E−31

0.294686

0.02905

OBI1-AS1

  1. ano.CpGs: Number of constituent CpG sites of DMR
  2. bmin_smoothed_fdr: Minimum FDR of the smoothed estimate
  3. cStouffer: Stouffer summary transform of the individual CpG FDRs
  4. dHMFDR: Harmonic mean of the individual CpG FDRs
  5. eFisher: Fisher combined probability transform of the individual CpG FDRs
  6. fmaxdiff: Maximum differential/coefficient within the DMR
  7. gmeandiff: Mean differential/coefficient across the DMR
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Clinical Epigenetics

ISSN: 1868-7083

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